PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00398.1.g00070.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 411aa    MW: 44867.7 Da    PI: 9.6051
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00398.1.g00070.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55e-16237285355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+++ +g
  Zpz_sc00398.1.g00070.1.am.mk 237 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPLPEMAARAHDVAALSVKG 285
                                   9****998.**********843...6**********************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-11235285IPR001471AP2/ERF domain
SMARTSM003807.1E-32236299IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-20236294IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-30236294IPR001471AP2/ERF domain
PROSITE profilePS5103222.629236293IPR001471AP2/ERF domain
CDDcd000183.43E-28237295No hitNo description
PRINTSPR003677.6E-9237248IPR001471AP2/ERF domain
PRINTSPR003677.6E-9259275IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MAKAADGMDR TKSKGKKNQV PDQRNITFPL NNEEHDPALC HAASINARKG AAITPTRLDA  60
LPRAREPSAE AEINGAERSA QPRAEPGEES ASGGPTGSVD QTGQRRFMKG RRRPDMCPVH  120
RRPLIAAGSC GRTLRSRDLR EPLCEYLLLI PRASYPLPRL PPLARDTTTI APDISLDQRI  180
ERALNRLITH RQSIVRPHVV RSAQTPPTST SSDATRKPPR PQDDDAGASP QGTVPAYRGV  240
RMRAWGKWVS EIREPRKKSR IWLGTFPLPE MAARAHDVAA LSVKGARAVL NFPDLAGVLP  300
RPASLAPRDV QAAAALMPQR MKQACGSSYL AAPPAASSAA VADGQRPRAY SCDEQEPSNQ  360
PGQGEVAQLV FDELAPLWVE EVVEFGPSTE HQWTPYDGLD ANGFQPLLWE Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-14237293663ATERF1
3gcc_A2e-14237293663ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00529DAPTransfer from AT5G25810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1088733e-71AK108873.1 Oryza sativa Japonica Group cDNA clone:002-152-C11, full insert sequence.
GenBankAP0031973e-71AP003197.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1015E06.
GenBankAP0149573e-71AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY3393743e-71AY339374.1 Oryza sativa (japonica cultivar-group) Ap21 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.14e-43ERF family protein