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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00398.1.g00070.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 411aa MW: 44867.7 Da PI: 9.6051 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.5 | 5e-16 | 237 | 285 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++ a+++ +g Zpz_sc00398.1.g00070.1.am.mk 237 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPLPEMAARAHDVAALSVKG 285 9****998.**********843...6**********************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.6E-11 | 235 | 285 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.1E-32 | 236 | 299 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-20 | 236 | 294 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-30 | 236 | 294 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.629 | 236 | 293 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.43E-28 | 237 | 295 | No hit | No description |
PRINTS | PR00367 | 7.6E-9 | 237 | 248 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-9 | 259 | 275 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009825 | Biological Process | multidimensional cell growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MAKAADGMDR TKSKGKKNQV PDQRNITFPL NNEEHDPALC HAASINARKG AAITPTRLDA 60 LPRAREPSAE AEINGAERSA QPRAEPGEES ASGGPTGSVD QTGQRRFMKG RRRPDMCPVH 120 RRPLIAAGSC GRTLRSRDLR EPLCEYLLLI PRASYPLPRL PPLARDTTTI APDISLDQRI 180 ERALNRLITH RQSIVRPHVV RSAQTPPTST SSDATRKPPR PQDDDAGASP QGTVPAYRGV 240 RMRAWGKWVS EIREPRKKSR IWLGTFPLPE MAARAHDVAA LSVKGARAVL NFPDLAGVLP 300 RPASLAPRDV QAAAALMPQR MKQACGSSYL AAPPAASSAA VADGQRPRAY SCDEQEPSNQ 360 PGQGEVAQLV FDELAPLWVE EVVEFGPSTE HQWTPYDGLD ANGFQPLLWE Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-14 | 237 | 293 | 6 | 63 | ATERF1 |
3gcc_A | 2e-14 | 237 | 293 | 6 | 63 | ATERF1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00529 | DAP | Transfer from AT5G25810 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108873 | 3e-71 | AK108873.1 Oryza sativa Japonica Group cDNA clone:002-152-C11, full insert sequence. | |||
GenBank | AP003197 | 3e-71 | AP003197.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1015E06. | |||
GenBank | AP014957 | 3e-71 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY339374 | 3e-71 | AY339374.1 Oryza sativa (japonica cultivar-group) Ap21 mRNA, complete cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25810.1 | 4e-43 | ERF family protein |